PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC021384.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 200aa    MW: 22894.4 Da    PI: 9.9649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC021384.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.4e-0693114426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     C f+ + G+C  G +CkF+H+
  EcC021384.30  93 IVCEFYKA-GQCAKGFKCKFSHD 114
                   57996666.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.85989116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-689114IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-489115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-491115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953159197IPR000571Zinc finger, CCCH-type
SMARTSM003564.5159196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MPPKQAAKKA DLAKKQKMVE DKTFGLKNKN KSKNVQKYVQ TLQQSVRPKA DPSGTAAKKK  60
KEESKAKDKE LNDLFKIAVS QPKVPVGVDP KSIVCEFYKA GQCAKGFKCK FSHDLNVQRK  120
GEKIDLYSDK RDNGTMEEWD QETLEKVVES KNKEYIQNKP TDIVCKYFLE AVEKKQYGWF  180
WVCPNGGKDC HYRHALPPGY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922494.11e-120PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-117C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0D2MFU71e-120A0A0D2MFU7_G
STRINGVIT_13s0019g03490.t011e-118(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-105C3H family protein